The protesters converged on the presidential palace in the Sudanese capital Khartoum, shouting "One army, one people" and demanding "a military government".
Participants in talks in Switzerland will vote next week to pick a three-person presidential council and a prime minister to oversee preparations for this year's national election.
Mali's junta has launched a three-day national consultation to discuss its promised transition to civilian rule a month after it overthrew the nation's leader, Ibrahim Boubacar Keita.
South Sudan's opposition leader Riek Machar says he will return to Juba in April to form transitional government with President Salva Kiir
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